Computational Modelling Group

Emacs

Emacs is a family of text editors, characterized by their extensibility. One manual describes it as "the extensible, customizable, self-documenting, real-time display editor." Development began in the mid-1970s and continues actively as of 2012. Emacs has over 2,000 built-in commands and allows the user to combine these commands into macros to automate work, in particular with the use of Emacs Lisp, a variant of Lisp, providing a deep extension capability. (More from Wikipedia on Emacs )

Emacs has initially a steep learning curve but is a very powerful tool once the basics are mastered.

Commonly used implementations are Emacs and XEmacs on Linux-like systems, and additionally Aquamacs on Mac OS X.

For queries about this topic, contact Hans Fangohr.

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Projects

Ab initio simulations of chemical reactions on platinum nanoparticles

Chris-Kriton Skylaris (Investigator), Alvaro Ruiz-Serrano, Peter Cherry

•Use first principles calculations to study the relationship between shape and size of nanoparticle and the oxygen adsorption energy.

• Investigate the effect of high oxygen coverage on the catalytic activity of the nanoparticles.

Advanced modelling for two-phase reacting flow

Edward Richardson (Investigator)

Engine designers want computer programs to help them invent ways to use less fuel and produce less pollution. This research aims to provide an accurate and practical model for the injection and combustion of liquid fuel blends.

B-meson coupling with relativistic heavy quarks

Jonathan Flynn (Investigator), Ben Samways, Dirk Broemmel, Patrick Fritzsch

We non-perturbatively compute the coupling between B* and B pi meson states relying on relativistic heavy quarks and domain wall light fermions. The coupling is of importance for an effective description of hadronic heavy meson decays.

Cellular Automata Modelling of Membrane Formation and Protocell Evolution

Seth Bullock (Investigator), Stuart Bartlett

We simulated the meso-level behaviour of lipid-like particles in a range of chemical and physical environments. Self-organised protocellular structures can be shown to emerge spontaneously in systems with random, homogeneous initial conditions. Introducing an additional 'toxic' particle species and an associated set of synthesis reactions produced a new set of ecological behaviours compared to the original model of Ono and Ikegami.

Fluid Structure Interactions of Yacht Sails

Stephen Turnock (Investigator), Daniele Trimarchi

The research is the main subject of the PhD topic. It regards the application of fluid structure interaction techniques to the domain of yacht sails simulation

Hadronic structure on the computer

Jonathan Flynn (Investigator), Dirk Broemmel, Thomas Rae, Ben Samways

In experiments at the Large Hadron Collider (LHC) at CERN, Geneva, the interactions that occur between the colliding particles (protons in this case) can be factorised into a simple scattering between two constituent particles, called quarks, followed by a hadronisation process, which describes the dynamics of forming the bound proton states. Quarks are particles within the proton that bind to form composite particles (hadrons) such as a proton. The scattering process can be computed relatively easily, but hadronisation is intrinsically non-perturbative and hard to calculate. Lattice QCD (computer simulation of QCD on a discrete space-time lattice) provides our only known first-principles and systematically-improvable method to address problems like hadronisation. This project uses Iridis to extract parton distribution amplitudes which are experimentally inaccessible, but needed to describe the quark structure of hadrons.

How far can we stretch the MARTINI?

Syma Khalid (Investigator), Ric Gillams

To date, coarse-grained lipid models have generally been parameterised to ensure the correct prediction of structural properties of membranes, such as the area per lipid and the bilayer thickness. The work described here explores the extent to which coarse-grained models are able to predict correctly bulk properties of lipids (phase behaviour) as well as the mechanical properties, such as lateral pressure profiles and stored elastic stress in bilayers. Such an evaluation is crucial for understanding the predictive capabilities of coarse-grained models.

Multiscale modelling of biological membranes

Jonathan Essex (Investigator), Mario Orsi

Biological membranes are complex and fascinating systems, characterised by proteins floating in a sea of lipids. Biomembranes, besides being the fundamental structures employed by nature to encapsulate cells, play crucial roles in many phenomena indispensable for life, such as growth, energy storage, and in general information transduction via neural activity. In this project, we develop and apply multiscale computational models to simulate biological membranes and obtain molecular-level insights into fundamental structures and phenomena.

Nmag - computational micromagnetics

Hans Fangohr, Thomas Fischbacher (Investigators), Matteo Franchin, Andreas Knittel, Maximilian Albert, Dmitri Chernyshenko, Massoud Najafi, Richard Boardman

Nmag is a micromagnetic simulation package based on the general purpose multi-physics library nsim. It is developed by the group of Hans Fangohr and Thomas Fischbacher in the School of Engineering Sciences at the University of Southampton and released under the GNU GPL.

Non-Perturbative Renormalisation on the Lattice

Jonathan Flynn (Investigator), Dirk Broemmel, Thomas Rae

In this project we compute renormalisation factors for various physical observables in a non-perturbative lattice framework. Renormalisation hereby arises due to a fundamental scale dependence of the physical processes.

Numerical investigation of the true sources of jet noise

Anurag Agarwal (Investigator), Samuel Sinayoko

Aircraft noise severely impacts the quality of life of people living close to airports. Noise generation by aircrafts is especially large during take-off. Jet noise is the dominant noise source during take-off. It is produced by the high speed flow generated by the engine. However, the actual source of sound remains unknown. A deeper understanding of the sources of jet noise is need to be able to reduce the noise. The aim of this project is to implement a innovative method that would allow to identify the sources of jet noise.

Self-Force and Black Hole Inspirals

Sam Dolan (Investigator)

We use IRIDIS to compute the self-force acting on a solar-mass black hole orbiting a supermassive black hole.

Structured low-rank approximation

Ivan Markovsky

Today's state-of-the-art methods for data processing are model based. We propose a fundamentally new approach that does not depend on an explicit model representation and can be used for model-free data processing. From a theoretical point of view, the prime advantage of the newly proposed paradigm is conceptual unification of existing methods. From a practical point of view, the proposed paradigm opens new possibilities for development of computational methods for data processing.

Wind direction effects on urban flows

Zheng-Tong Xie, Ian Castro (Investigators), Jean Claus

Numerical simulations of turbulent air flow are conducted on Iridis to investigate the effects of different wind directions on the flow within and above an urban-like canopy.

µ-VIS Computed Tomography Centre

Ian Sinclair, Richard Boardman, Dmitry Grinev, Philipp Thurner, Simon Cox, Jeremy Frey, Mark Spearing, Kenji Takeda (Investigators)

A dedicated centre for computed tomography (CT) at Southampton, providing complete support for 3D imaging science, serving Engineering, Biomedical, Environmental and Archaeological Sciences. The centre encompasses five complementary scanning systems supporting resolutions down to 200nm and imaging volumes in excess of one metre: from a matchstick to a tree trunk, from an ant's wing to a gas turbine blade.

People

Seth Bullock
Professor, Electronics and Computer Science (FPAS)
Andrew Collins
Professor, Medicine (FM)
Simon Cox
Professor, Engineering Sciences (FEE)
Jonathan Essex
Professor, Chemistry (FNES)
Hans Fangohr
Professor, Engineering Sciences (FEE)
Jonathan Flynn
Professor, Physics & Astronomy (FPAS)
Jeremy Frey
Professor, Chemistry (FNES)
Carsten Gundlach
Professor, Mathematics (FSHS)
Ian Sinclair
Professor, Engineering Sciences (FEE)
Mark Spearing
Professor, Engineering Sciences (FEE)
Stephen Turnock
Professor, Engineering Sciences (FEE)
Prasanth Nair
Senior Lecturer, Engineering Sciences (FEE)
Srinandan Dasmahapatra
Lecturer, Electronics and Computer Science (FPAS)
Ivan Markovsky
Lecturer, Electronics and Computer Science (FPAS)
Chris-Kriton Skylaris
Lecturer, Chemistry (FNES)
Philipp Thurner
Lecturer, Engineering Sciences (FEE)
Anatoliy Vorobev
Lecturer, Engineering Sciences (FEE)
Zheng-Tong Xie
Lecturer, Engineering Sciences (FEE)
Syma Khalid
Principal Research Fellow, Chemistry (FNES)
Edward Richardson
Senior Research Fellow, Engineering Sciences (FEE)
Philip Williamson
Senior Research Fellow, Biological Sciences (FNES)
Richard Boardman
Research Fellow, Engineering Sciences (FEE)
Dirk Broemmel
Research Fellow, Physics & Astronomy (FPAS)
Sam Dolan
Research Fellow, Mathematics (FSHS)
Matteo Franchin
Research Fellow, Engineering Sciences (FEE)
Patrick Fritzsch
Research Fellow, Physics & Astronomy (FPAS)
Dmitry Grinev
Research Fellow, Engineering Sciences (FEE)
Gunnar Mallon
Research Fellow, Geography (FSHS)
Maximilian Albert
Postgraduate Research Student, Engineering Sciences (FEE)
Stuart Bartlett
Postgraduate Research Student, Electronics and Computer Science (FPAS)
Peter Cherry
Postgraduate Research Student, Chemistry (FNES)
Jean Claus
Postgraduate Research Student, Engineering Sciences (FEE)
Alexandra Diem
Postgraduate Research Student, Electronics and Computer Science (FPAS)
Ric Gillams
Postgraduate Research Student, Chemistry (FNES)
Joshua Jeeson Daniel
Postgraduate Research Student, Engineering Sciences (FEE)
Kondwani Kanjere
Postgraduate Research Student, Engineering Sciences (FEE)
Aditya Karnik
Postgraduate Research Student, Engineering Sciences (FEE)
Andreas Knittel
Postgraduate Research Student, Engineering Sciences (FEE)
John Muddle
Postgraduate Research Student, Mathematics (FSHS)
Alkin Nasuf
Postgraduate Research Student, Engineering Sciences (FEE)
Thomas Rae
Postgraduate Research Student, Physics & Astronomy (FPAS)
Alvaro Ruiz-Serrano
Postgraduate Research Student, Chemistry (FNES)
Ben Samways
Postgraduate Research Student, Physics & Astronomy (FPAS)
Samuel Sinayoko
Postgraduate Research Student, Institute of Sound & Vibration Research (FEE)
Daniele Trimarchi
Postgraduate Research Student, Engineering Sciences (FEE)
Valerio Vitale
Postgraduate Research Student, Electronics and Computer Science (FPAS)
Iain Weaver
Postgraduate Research Student, Electronics and Computer Science (FPAS)
Robin Wilson
Postgraduate Research Student, Geography (FSHS)
Elisabeth zu-Erbach-Schoenberg
Postgraduate Research Student, Management (FBL)
Jessica Jones
Technical Staff, iSolutions
Elena Vataga
Technical Staff, iSolutions
Petrina Butler
Administrative Staff, Research and Innovation Services
Anurag Agarwal
Alumnus, Institute of Sound & Vibration Research (FEE)
Thomas Fischbacher
Alumnus, Engineering Sciences (FEE)
Anna Kapinska
Alumnus, ICG, University of Portsmouth
Massoud Najafi
Alumnus, Arbeitsbereich Technische Informatik Systeme, University of Hamburg, Germany
Kenji Takeda
Alumnus, Engineering Sciences (FEE)
Ian Bush
External Member, NAG Ltd, Oxford
Mario Orsi
External Member, Queen Mary University of London
Ian Castro
None, None