Multiscale Modelling of Cellular Calcium Signalling
- Homepage
- http://eprints.soton.ac.uk/id/eprint/350651
- Started
- 1st October 2008
- Ended
- 1st October 2012
- Research Team
- Dan Mason
- Investigators
- Hans Fangohr, Jonathan Essex
The ability to design effective medicines that treat disease requires a detailed knowledge of the associated natural processes. These natural processes operate on a range of complex spatio-temporal scales.
Computational modelling allows us to investigate such processes, however these often provide detail only at a single spatiotemporal scale. Multiscale modelling aims to combine or link these scales represented by computational models, such that information is passed between different types of simulation.
This project developed a multiscale model of cellular calcium signalling through extension of existing models. The pancreatic acinar cell was chosen for this treatment, owing to the polarised structure, range of signalling events, and disease states that are characteristic of this cell type.
Categories
Life sciences simulation: Bioinformatics, Biomathematics, Systems biology
Physical Systems and Engineering simulation: Diffusion
Algorithms and computational methods: Agents, Cellular automata, Finite differences, Finite elements, Multi-core, Multi-scale
Visualisation and data handling methods: Data Management
Visualisation and data handling software: Pylab, VTK
Software Engineering Tools: Mercurial
Programming languages and libraries: Python
Computational platforms: Linux, Windows
Transdisciplinary tags: Complex Systems, Quantitative Biology, Scientific Computing, Software Engineering, Visualisation